65 posts tagged with "seqera cloud"

Feature updates and improvements​

Compute environments​

• Added the compute environment ID to the compute environment row card.
• Added the c9gd instance family to the NVMe instance list.
• Added a force query parameter to the credentials POST /validate endpoint for operator override.
• Updated the list of available Azure regions.

Bug fixes​

Compute environments​

• Added a clear error message when Azure Batch pool deletion fails.
• Disabled compute environment form submission while the form is invalid.
• Classified SDK-wrapped network errors as transient in the credentials preflight cron.
• Backed off pre-flight compute environment validation on transient or error probes.
• Accepted cross-account allowBuckets work directories in pre-flight checks.

Data explorer​

• Signed GCS genomic file URLs with V4 for IGV preview.

Access control​

• Skipped non-RSA tokens in the OIDC verifier to reduce log noise.

Feature updates and improvements​

Compute environments​

• Added VPC and multiple subnet selection to AWS Cloud compute environments.
• Added the number of instances provisioned per run to the run page, sourced from the Scheduler run summary.
• Added the g7 instance family to the NVMe list.

Pipelines​

• Updated Nextflow to v26.04.4.

Access control​

• Split the data_link and data_link_object permissions into separate scopes. Workspace members with View, Connect, or Launch roles can now download files and generate download URLs from data-links. Upload and delete file operations remain restricted to Maintain and above.
• Added pre-filling of first and last name from GitHub signup.

Monitoring and observability​

• Added audit entries for pre-flight cron status transitions.

General​

• Added a default workspace preference to the user profile.
• Listed avatar and username rows in the avatar-group popover.

Bug fixes​

Compute environments​

• Fixed AWS STS to allow instance credentials without an explicit role mode.
• Fixed the AWS Cloud head job to honor vpcId and subnet network selection.
• Downgraded ecs:DescribeContainerInstances permission errors to WARN level.

Pipelines​

• Fixed lineage incorrectly showing as not enabled for submitted runs when it was enabled.

Access control​

• Fixed detection of a personal access token as a duplicate when creating a GitHub App with the same credentials.
• Fixed domain verification to be enforced during SSO enablement and ticket refresh.

Feature updates and improvements​

Compute environments​

• Redesigned the compute environment list as a row-card table.
• Added attribute chips to the compute environment list.
• Added an on-demand credentials validation button.

Bug fixes​

Pipelines​

• Surfaced launch-form errors on disabled fields so pipeline-info errors (bad URL, missing main script, unknown revision) no longer disappear silently.
• Preserved optimization targets verbatim on workflow launch.

Feature updates and improvements​

Compute environments​

• Added AWS Cloud compute environment EBS volume encryption with an optional KMS key.
• Added an INVALID-status error alert on the credentials view page.
• Added display of the AWS jump-role trust policy.
• Added the m9gd instance family to the NVMe list.
• Relaxed the credentials validation cron interval to 12 hours.

Pipelines​

• Added a launch output directory option to the launch form.
• Added a shareable deep link to the task details view.
• Showed the metrics tab for canceled workflow runs.

Bug fixes​

Compute environments​

• Downgraded a SLURM/HPC executor error to a warning so transient submission issues no longer surface as failures.
• Treated AWS SDK network errors as transient so they no longer fail compute environment operations on the first retry-able blip.

Monitoring​

• Included gpuMetrics in task JSON serialization so GPU usage is now visible in the task payload.

Pipelines​

• Fixed an unexpected error when the workflow limiter canceled a newly launched workflow.
• Preserved a custom schema when added for the first time in pipeline edit mode.

Feature updates and improvements​

Access control​

• Enabled GitHub App credentials for all workspaces.

Compute environments​

• Added security group name search to AWS drop-downs.

Pipelines​

• Surfaced launch-time settings, including profiles and syntax parser, in the run config tab.

Bug fixes​

Data explorer​

• Fixed IGV index file handling by presigning indexURLs independently.

Pipelines​

• Fixed the Nextflow syntax parser v2 toggle to seed from the saved launch config.
• Included syntaxParser in the workflow launch API response.
• Cleared stale main script launch errors.
• Fixed the launch form to skip the lineage request in user space.

Feature updates and improvements​

Pipelines​

• Exposed tower.launch.config.maxSize to frontend validators so launch configuration size limits stay aligned with the backend.

Bug fixes​

Pipelines​

• Added frontend validation of paramsText against its JSON-serialized size to align launch parameter limits with backend submission constraints.
• Added missing metadata, pipeline versioning, and data lineage fields to the workflow launch form summary.
• Fixed the workflow launch payload to always send lineage.enabled so the data lineage toggle setting persists correctly.

General​

• Fixed the workspace switcher to keep the search input focused during arrow-key navigation.
• Fixed background worker shutdown by draining workers before JedisPool shutdown to prevent dropped jobs.
• Fixed navigation switcher responsiveness.

Feature updates and improvements​

Compute environments​

• Added a configurable boot disk size for Azure Batch pools.
• Added r8idn, r8idb, m8idn, and m8idb instance families to the NVMe list.

Monitoring​

• Improved the JSON diff component with small refinements.

Pipelines​

• Added the Lineage ID to the Run Info page.

General​

• Introduced a panel search input and integrated it into the navigation switcher component.
• Improved workspace switch redirects to preserve the active sidebar section.

Bug fixes​

Access control​

• Fixed the audit event type for MANUAL-to-SCIM promotion.
• Kept the infinite-scroll drop-down open when clicking the search input.

Compute environments​

• Improved Entra robustness by adding equals/hashCode for credentials and making the managed identity regex case-insensitive.
• Deduplicated the compute environment entry in the launch drop-down.

Data Explorer​

• Made credentials a required field in the Add data repository form.
• Fixed the Data Explorer custom bucket E2E test to select credentials.

Monitoring​

• Fixed a referential integrity constraint violation when saving an audit log image bundle in H2.
• Replaced the word ID with IP in the audit logs table.
• Coalesced setAvailableCredits calls per organization.
• Coalesced stop events per organization using a Redis lock.
• Added a differential TTL and empty-result guard for the Metronome balance cache.
• Coalesced handleOrganizationCreditsExpiration calls per organization.
• Skipped null balance puts in listGrantBalance to avoid a ConcurrentHashMap NPE.

Pipelines​

• Refined workflow_updated events that contain no diff.
• Prevented duplicate GitHub credentials across PAT and GitHub App types.
• Resolved file paths to the most recent lineage record.

General​

• Fixed the expandable-text overlay to display only when text is truncated.
• Preserved panel search focus inside mat-menu.

Feature updates and improvements​

Compute environments​

• Added a CloudInfo cloud instance type catalog and chip-selector filters specification.
• Added a description field to the Compute Environment V2 form.

Datasets​

• Exposed dataset file size in version API responses.

Monitoring​

• Added a getCost failure metric.
• Rendered fractional Allocated CPU values on the Run Details metrics card.
• Added SCIM group audit logs.

Pipelines​

• Added a Nextflow syntax parser v2 toggle.
• Added launch-time settings to the workflow configuration tab.

Studios​

• Added the compute environment name to the Studios row card.
• Added new API endpoints to fetch compatible compute environments for a Studio and update the compute environment on a Studio.
• Enabled updating the compute environment on a Studio.
• Resolved the user on SSH Studio connection attempts.

Data Explorer​

• Cached the impersonated signer for WIF pre-signed URLs.

General​

• Introduced scroll-into-error behavior for the notification container component and unified the placement of message containers across form pages.
• Collapsed Settings breadcrumbs to two segments.
• Refined styling for the bordered variant of label values.
• Improved readability of usage chip icons on dark backgrounds.

Bug fixes​

Access control​

• Redirected on JWT expiry and stopped the onboarding polling loop.
• Auto-created organization membership during IdP group reconciliation.
• Polished the IdP group mapping UI.

Compute environments​

• Validated NVMe and Wave dependencies for Fusion v2.
• Split Forge disposal into separate resources and credentials phases.
• Ported the Forge disposal split to Azure and GCP.
• Clarified setRemoteAvailableCredits behavior and floored stale balance updates.
• Granted lineage store access to the forged AWS Batch role.
• Bumped the GCP default GPU image family to CUDA 12.9.
• Resolved the WIF credential owner context inside a read-only transaction.

Data Explorer​

• Supported GCS pre-signed URLs with WIF credentials in Data Explorer.

Pipelines​

• Disabled the lineage launch toggle when lineage settings are not configured or when the compute environment does not support lineage.
• Set the default value for Launch.syntaxParser to match the database schema.
• De-flaked the PipelineServiceTest agent revisions check.

Studios​

• Recovered legacy Studio event names in the usage query.
• Fell back to baseline Studio capabilities when the manifest is missing or the Studio version is not found in the manifest.

General​

• Pinned the Netty allocator to pooled to mitigate Micronaut 4.9 direct memory growth.
• Stopped ProviderUnrecoverableException from hiding JVM errors.
• Increased the polling timeout for the async audit image bundle test.

Feature updates and improvements​

Access control​

• Automatically disabled SSO on organization deletion.
• Enabled SSO domain verification.
• Skipped showcase workspace enrollment for free-tier users.

Compute environments​

• Added an export configuration option to the compute environment menu.

General​

• Added inactive scope styles and a settings breadcrumb trail.
• Aligned workspace settings routes and page titles.
• Updated workspace settings hub copy and added E2E selectors.
• Updated the labels page and modal type copy.

Bug fixes​

Compute environments​

• Fixed the compute environment edit form to skip name copy-rename when opened.

Data Explorer​

• Prevented bucket actions from becoming stuck in the CREATING state.

Studios​

• Fixed the redirection route for the Save as new Studio action.

Feature updates and improvements​

Compute environments​

• Added force-delete for stuck compute environments.
• Added an optional description field to compute environments.
• Added region name search to the Seqera Compute drop-down mwnu.

Pipelines​

• Added Nextflow lineage integration with indexing, API, and UI for browsing workflow lineage data.
• Added cron action source for scheduled pipeline launches.
• Added effectiveCpus and effectiveMemory helpers on Task.

Monitoring​

• Added GPU metrics.

General​

• Added automatic breadcrumb navigation in the page header.

Bug fixes​

Compute environments​

• Fixed AWS Batch child jobs to terminate on workflow cancellation.
• Added hpc6id to the NVMe instance families allowlist.

Data Explorer​

• Fixed 403 errors to surface properly when adding a data-link to a GCS bucket.
• Fixed text overflow in the Data Explorer modal.

Pipelines​

• Fixed cpuShares to vCPU conversion in Task.getEffectiveCpus.
• Fixed parameters being hidden in the launch form when hidden=false is set in nextflow_schema.json.

Access control​

• Fixed user metadata reading for name, surname, and organization fields.
• Fixed organization claim reading to use the namespaced claim instead of user_metadata.
• Classified DCR-registered OIDC clients as third-party.
• Updated the default refresh token expiration in OIDC.
• Fixed POST /metering to allow regular authenticated users.

Studios​

• Fixed the Studio form to enable buttons after valid input.
• Fixed the Mount data button to display on the Studios form.

General​

• Fixed copy icon position by pinning it to the top-right corner in code blocks.